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alphadia documentation
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  • 🔧 Installation
  • Quickstart
  • Quickstart using CLI
  • 📚 User Guides
    • Library-free DIA
    • DIA Transfer Learning
    • Evaluate Transfer Learning
  • 📖 Methods
    • Command line
    • Transfer Learning
    • Protein Inference
    • AlphaDIA grouping and parsimony approach
    • Algorithmic implementation
    • Output format
    • Distributed AlphaDIA search on HPCL
    • Distributed search concept
    • Steps to set up a search
    • Search Parameter Optimization and Calibration
  • 🛠️ Developer guide

Development

  • Modules
    • calibration
    • fdr
    • _fdrx
    • fragcomp
    • libtransform
    • outputtransform
    • search_step
    • search.selection
    • search.scoring
    • utils
    • validation
    • workflow
    • workflow.managers
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